code

Open-source tools I've written or helped build, everything else lives on GitHub

• clone2vec2023–now

  Python package for single-cell lineage tracing analysis. Builds clonal embeddings, so clones can be explored the way cells usually are. Formerly scLiTr

  Docs PyPI

• py-fastglmpca2025

  PyTorch implementation of the fastglmpca algorithm (Poisson GLM-PCA) for fast dimensionality reduction of count data

  PyPI Tutorial

• symphonypy2022

  Python port of the Symphony algorithm for mapping single-cell data onto reference atlases

  Docs PyPI