selected publications

The full and current list is on Google Scholar

1. 2026

   Clonal embeddings allow exploratory analysis of lineage-resolved single-cell data

   Sergey Isaev, Alek G Erickson, Igor Adameyko, et al.

   bioRxivpreprint

2. Clonal analysis for understanding fate biases in developing embryos

   Sergey Isaev†, Igor Adameyko†

   Current Opinion in Genetics & Development 99, 102475review† co-corresponding

3. Cortical development dynamics across autism spectrum disorder mouse models

   Lena A Schwarz, Christoph P Dotter, Sergey Isaev, et al.

   Nature

4. 2025

   Mesenchymal thymic niche cells enable regeneration of the adult thymus and T cell immunity

   Karin Gustafsson, Sergey Isaev, Kamdin Mirsanaye, et al.

   Nature Biotechnology

5. 2024

   Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases

   Alek G Erickson*, Sergey Isaev*, Jingyan He, et al.

   bioRxivpreprint* equal contribution

6. Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients

   Andrea J Radtke*, Ekaterina Postovalova*, Arina Varlamova, …, Sergey Isaev, et al.

   Cancer Cell 42 (3), 444–463* equal contribution

7. 2022

   Multiregional single-cell proteogenomic analysis of ccRCC reveals cytokine drivers of intratumor spatial heterogeneity

   Natalia Miheecheva, Ekaterina Postovalova, Yang Lyu, …, Sergey Isaev, et al.

   Cell Reports 40 (7)

8. 2019

   Dicyemida and Orthonectida: two stories of body plan simplification

   Oleg A Zverkov, Kirill V Mikhailov, Sergey V Isaev, et al.

   Frontiers in Genetics 10, 443